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access array microfluidic chip  (fluidigm)


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    Structured Review

    fluidigm access array microfluidic chip
    Access Array Microfluidic Chip, supplied by fluidigm, used in various techniques. Bioz Stars score: 93/100, based on 843 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/access+array+microfluidic+chips/Access+Array/pm40428411-84-8-7
    Average 93 stars, based on 843 article reviews
    access array microfluidic chip - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Purification:

    Article Title: Comparison of NK alloreactivity prediction models based on KIR-MHC interactions in haematopoeitic stem cell transplantation
    Article Snippet: .. After purification with SPRI - solid phase reversible immobilization - select beads AMPure XP (BeckmanCoulter, Brea, USA), concentration of the pool was checked via qPCR using an ECO Real-Time PCR cycler (Illumina, San Diego, USA) HLA genotyping: After unique indexing and addition of adapter sequences of each sample, PCR for exon 2 and exon 3 amplification was performed on Fluidigm Access Array microfluidic chips, combining 48 samples with 48 primer groups for PCR amplification in 2048 individual 35nL reaction chambers. .. Following PCR, the 48 samples of one Fluidigm chip were pooled, then pool was purified using SPRI bead technology, AMPure XP (Beckman Coulter, Brea, USA) before being quantified with qPCR.

    Concentration Assay:

    Article Title: Comparison of NK alloreactivity prediction models based on KIR-MHC interactions in haematopoeitic stem cell transplantation
    Article Snippet: .. After purification with SPRI - solid phase reversible immobilization - select beads AMPure XP (BeckmanCoulter, Brea, USA), concentration of the pool was checked via qPCR using an ECO Real-Time PCR cycler (Illumina, San Diego, USA) HLA genotyping: After unique indexing and addition of adapter sequences of each sample, PCR for exon 2 and exon 3 amplification was performed on Fluidigm Access Array microfluidic chips, combining 48 samples with 48 primer groups for PCR amplification in 2048 individual 35nL reaction chambers. .. Following PCR, the 48 samples of one Fluidigm chip were pooled, then pool was purified using SPRI bead technology, AMPure XP (Beckman Coulter, Brea, USA) before being quantified with qPCR.

    Real-time Polymerase Chain Reaction:

    Article Title: Comparison of NK alloreactivity prediction models based on KIR-MHC interactions in haematopoeitic stem cell transplantation
    Article Snippet: .. After purification with SPRI - solid phase reversible immobilization - select beads AMPure XP (BeckmanCoulter, Brea, USA), concentration of the pool was checked via qPCR using an ECO Real-Time PCR cycler (Illumina, San Diego, USA) HLA genotyping: After unique indexing and addition of adapter sequences of each sample, PCR for exon 2 and exon 3 amplification was performed on Fluidigm Access Array microfluidic chips, combining 48 samples with 48 primer groups for PCR amplification in 2048 individual 35nL reaction chambers. .. Following PCR, the 48 samples of one Fluidigm chip were pooled, then pool was purified using SPRI bead technology, AMPure XP (Beckman Coulter, Brea, USA) before being quantified with qPCR.

    Polymerase Chain Reaction:

    Article Title: Comparison of NK alloreactivity prediction models based on KIR-MHC interactions in haematopoeitic stem cell transplantation
    Article Snippet: .. After purification with SPRI - solid phase reversible immobilization - select beads AMPure XP (BeckmanCoulter, Brea, USA), concentration of the pool was checked via qPCR using an ECO Real-Time PCR cycler (Illumina, San Diego, USA) HLA genotyping: After unique indexing and addition of adapter sequences of each sample, PCR for exon 2 and exon 3 amplification was performed on Fluidigm Access Array microfluidic chips, combining 48 samples with 48 primer groups for PCR amplification in 2048 individual 35nL reaction chambers. .. Following PCR, the 48 samples of one Fluidigm chip were pooled, then pool was purified using SPRI bead technology, AMPure XP (Beckman Coulter, Brea, USA) before being quantified with qPCR.

    Article Title: MEDULLOBLASTOMA EXOME SEQUENCING UNCOVERS SUBTYPE-SPECIFIC SOMATIC MUTATIONS
    Article Snippet: .. For validation, PCR on Access Array microfluidic chips (Fluidigm) was followed by single-molecule real-time sequencing (Pacific Biosciences) per manufacturer’s instructions. ..

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing.
    Article Snippet: .. Results: We have established a straightforward three-step workflow for high-throughput HLA typing: Exons 2 and 3 of HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 are amplified by PCR on Fluidigm Access Array microfluidic chips. .. Illumina sequencing adapters and sample specific tags are directly incorporated during PCR.

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing.
    Article Snippet: .. HLA-specific DNA amplification by PCR is performed on Fluidigm Access Array microfluidic chips [8]. ..

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
    Article Snippet: .. We have established a straightforward three-step workflow for high-throughput HLA typing: Exons 2 and 3 of HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 are amplified by PCR on Fluidigm Access Array microfluidic chips. .. Illumina sequencing adapters and sample specific tags are directly incorporated during PCR.

    Article Title: Prediction of spurious HLA class II typing results using probabilistic classification.
    Article Snippet: While modern high-throughput sequence-based HLA genotyping methods generally provide highly accurate typing results, artefacts may nonetheless arise for numerous reasons, such as sample contamination, sequencing errors, read misalignments, or PCR amplification biases.. To help detecting spurious typing results, we tested the performance of two probabilistic classifiers (binary logistic regression and random forest models) based on population-specific genotype frequencies.. We trained the model using high-resolution typing results for HLADRB1, DQB1, and DPB1 from large samples of German, Polish and UK-based donors.

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
    Article Snippet: .. HLA-specific DNA amplification by PCR is performed on Fluidigm Access Array microfluidic chips [ ]. ..

    Amplification:

    Article Title: Comparison of NK alloreactivity prediction models based on KIR-MHC interactions in haematopoeitic stem cell transplantation
    Article Snippet: .. After purification with SPRI - solid phase reversible immobilization - select beads AMPure XP (BeckmanCoulter, Brea, USA), concentration of the pool was checked via qPCR using an ECO Real-Time PCR cycler (Illumina, San Diego, USA) HLA genotyping: After unique indexing and addition of adapter sequences of each sample, PCR for exon 2 and exon 3 amplification was performed on Fluidigm Access Array microfluidic chips, combining 48 samples with 48 primer groups for PCR amplification in 2048 individual 35nL reaction chambers. .. Following PCR, the 48 samples of one Fluidigm chip were pooled, then pool was purified using SPRI bead technology, AMPure XP (Beckman Coulter, Brea, USA) before being quantified with qPCR.

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing.
    Article Snippet: .. Results: We have established a straightforward three-step workflow for high-throughput HLA typing: Exons 2 and 3 of HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 are amplified by PCR on Fluidigm Access Array microfluidic chips. .. Illumina sequencing adapters and sample specific tags are directly incorporated during PCR.

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
    Article Snippet: .. We have established a straightforward three-step workflow for high-throughput HLA typing: Exons 2 and 3 of HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 are amplified by PCR on Fluidigm Access Array microfluidic chips. .. Illumina sequencing adapters and sample specific tags are directly incorporated during PCR.

    Biomarker Discovery:

    Article Title: MEDULLOBLASTOMA EXOME SEQUENCING UNCOVERS SUBTYPE-SPECIFIC SOMATIC MUTATIONS
    Article Snippet: .. For validation, PCR on Access Array microfluidic chips (Fluidigm) was followed by single-molecule real-time sequencing (Pacific Biosciences) per manufacturer’s instructions. ..

    Sequencing:

    Article Title: MEDULLOBLASTOMA EXOME SEQUENCING UNCOVERS SUBTYPE-SPECIFIC SOMATIC MUTATIONS
    Article Snippet: .. For validation, PCR on Access Array microfluidic chips (Fluidigm) was followed by single-molecule real-time sequencing (Pacific Biosciences) per manufacturer’s instructions. ..

    Immunopeptidomics:

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing.
    Article Snippet: .. Results: We have established a straightforward three-step workflow for high-throughput HLA typing: Exons 2 and 3 of HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 are amplified by PCR on Fluidigm Access Array microfluidic chips. .. Illumina sequencing adapters and sample specific tags are directly incorporated during PCR.

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
    Article Snippet: .. We have established a straightforward three-step workflow for high-throughput HLA typing: Exons 2 and 3 of HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 are amplified by PCR on Fluidigm Access Array microfluidic chips. .. Illumina sequencing adapters and sample specific tags are directly incorporated during PCR.

    DNA Amplification:

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing.
    Article Snippet: .. HLA-specific DNA amplification by PCR is performed on Fluidigm Access Array microfluidic chips [8]. ..

    Article Title: Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
    Article Snippet: .. HLA-specific DNA amplification by PCR is performed on Fluidigm Access Array microfluidic chips [ ]. ..

    Amplicon Sequencing:

    Article Title: Prediction of spurious HLA class II typing results using probabilistic classification.
    Article Snippet: While modern high-throughput sequence-based HLA genotyping methods generally provide highly accurate typing results, artefacts may nonetheless arise for numerous reasons, such as sample contamination, sequencing errors, read misalignments, or PCR amplification biases.. To help detecting spurious typing results, we tested the performance of two probabilistic classifiers (binary logistic regression and random forest models) based on population-specific genotype frequencies.. We trained the model using high-resolution typing results for HLADRB1, DQB1, and DPB1 from large samples of German, Polish and UK-based donors.



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